Wolfram Data Repository

Immediate Computable Access to Curated Contributed Data

HumanMethylation450 BeadChip

Source Notebook

Genomic coordinates relative to the CpG loci identifiers for Infinium HumanMethylation450 BeadChip

Details

This data is imported from Illumina, Inc. tech support website about Infinium HumanMethylation450K v1.2 Product Files
This data contains genomic coordinates for the CpG loci identifier of HumanMethylation450 BeadChip in the standardized Illumina nomenclature

Examples

Basic Examples (1) 

Display the first 10 rows of the dataset:

In[1]:=
ResourceData[\!\(\* TagBox["\"\<HumanMethylation450 BeadChip\>\"", #& , BoxID -> "ResourceTag-HumanMethylation450 BeadChip-Input", AutoDelete->True]\)][[;; 10]]
Out[1]=

Scope & Additional Elements (2) 

Sorting rows based on Illumina ID, and showing the first 10 in the list:

In[2]:=
SortBy["IlmnID"][ResourceData[\!\(\* TagBox["\"\<HumanMethylation450 BeadChip\>\"", #& , BoxID -> "ResourceTag-HumanMethylation450 BeadChip-Input", AutoDelete->True]\)]][[;; 10]]
Out[2]=

Restricting the information to gene TTTY18:

In[3]:=
Select[#UCSCRefGeneName == "TTTY18" &]@ResourceData[\!\(\* TagBox["\"\<HumanMethylation450 BeadChip\>\"", #& , BoxID -> "ResourceTag-HumanMethylation450 BeadChip-Input", AutoDelete->True]\)]
Out[3]=

Visualizations (1) 

The data is ready to be visualized as a two-dimensional schematic diagram of the biomolecular sequence, here it is shown how to focus on a particular Illumina ID and the relative sequence of interest:

In[4]:=
illuminaID = "cg00035864"; sequenceKey = "SourceSeq"; Query[ Select[#IlmnID == illuminaID &], <|sequenceKey -> #[sequenceKey], "BioSequencePlot" -> BioSequencePlot[BioSequence["DNA", #[sequenceKey]]]|> &]@ ResourceData[\!\(\* TagBox["\"\<HumanMethylation450 BeadChip\>\"", #& , BoxID -> "ResourceTag-HumanMethylation450 BeadChip-Input", AutoDelete->True]\)]
Out[6]=

Jane ShenGunther, "HumanMethylation450 BeadChip" from the Wolfram Data Repository (2023)  

License Information

For Research Use Only. Not for use in diagnostic procedures.

Data Resource History

  • Date Created:

Source Metadata

  • Title: Infinium HumanMethylation450K v1.2
  • Creator: Illumina, Inc.
  • Date: 23 May 2013
  • Citation: Data about Infinium HumanMethylation450K v1.2 genomic coordinates

See Also

Publisher Information

  • Prepared for the Wolfram Data Repository By: Jane Shen-Gunther MD, PhD, and Wolfram Solutions
  • Publisher of Record: Jane ShenGunther