Wolfram Data Repository

Immediate Computable Access to Curated Contributed Data

Sample Data: Cancer Incidence

Source Notebook

Locations of cancer incidence annotated with larynx/lung marks

Details

Locations of cancer incidence in a polygonal observation region bounded by the region Rectangle[{343.45, 410.41}, {366.45, 431.79}] kilometers, annotated with larynx/lung marks.

Examples

Basic Examples (1) 

In[1]:=
ResourceData[\!\(\* TagBox["\"\<Sample Data: Cancer Incidence\>\"", #& , BoxID -> "ResourceTag-Sample Data: Cancer Incidence-Input", AutoDelete->True]\), "Data"]
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Summary of the spatial point data:

In[2]:=
ResourceData[\!\(\* TagBox["\"\<Sample Data: Cancer Incidence\>\"", #& , BoxID -> "ResourceTag-Sample Data: Cancer Incidence-Input", AutoDelete->True]\), "Data"]["Summary"]
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Visualizations (3) 

Plot the spatial point data:

In[3]:=
ListPlot[ResourceData[\!\(\* TagBox["\"\<Sample Data: Cancer Incidence\>\"", #& , BoxID -> "ResourceTag-Sample Data: Cancer Incidence-Input", AutoDelete->True]\), "Data"]]
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Visualize the data with the annotations:

In[4]:=
PointValuePlot[ResourceData[\!\(\* TagBox["\"\<Sample Data: Cancer Incidence\>\"", #& , BoxID -> "ResourceTag-Sample Data: Cancer Incidence-Input", AutoDelete->True]\), "Data"], PlotLegends -> Automatic]
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Visualize the smooth point density:

In[5]:=
density = SmoothPointDensity[ResourceData[\!\(\* TagBox["\"\<Sample Data: Cancer Incidence\>\"", #& , BoxID -> "ResourceTag-Sample Data: Cancer Incidence-Input", AutoDelete->True]\), "Data"]]
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In[6]:=
Show[density["DensityVisualization"], ListPlot[ResourceData[\!\(\* TagBox["\"\<Sample Data: Cancer Incidence\>\"", #& , BoxID -> "ResourceTag-Sample Data: Cancer Incidence-Input", AutoDelete->True]\), "Data"], PlotStyle -> Black]]
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Analysis (5) 

Compute probability of finding a point within given radius of an existing point - NearestNeighborG is the CDF of the nearest neighbor distribution:

In[7]:=
nnG = NearestNeighborG[ResourceData[\!\(\* TagBox["\"\<Sample Data: Cancer Incidence\>\"", #& , BoxID -> "ResourceTag-Sample Data: Cancer Incidence-Input", AutoDelete->True]\), "Data"]]
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In[8]:=
maxR = nnG["MaxRadius"]
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In[9]:=
DiscretePlot[nnG[r], {r, 0, maxR, maxR/100}, PlotRange -> {0, 1}, AxesLabel -> {"radius", "probability"}]
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NearestNeighborG as the CDF of nearest neighbor distribution can be used to compute the mean distance between a typical point and its nearest neighbor - the mean of a positive support distribution can be approximated via a Riemann sum of 1-CDF. To use Riemann approximation create the partition of the support interval from 0 to maxR into 100 parts and compute the value of the NearestNeighborG at the middle of each subinterval:

In[10]:=
step = maxR/100; middles = Subdivide[step/2, maxR - step/2, 100]; values = nnG[middles];

Now compute the Riemann sum to find the mean distance between a typical point and its nearest neighbor:

In[11]:=
Total[(1 - values)*step]
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Account for scale and units:

In[12]:=
%*ResourceData[\!\(\* TagBox["\"\<Sample Data: Cancer Incidence\>\"", #& , BoxID -> "ResourceTag-Sample Data: Cancer Incidence-Input", AutoDelete->True]\), "RegionScale"]
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Test for complete spatial randomness:

In[13]:=
SpatialRandomnessTest[ResourceData[\!\(\* TagBox["\"\<Sample Data: Cancer Incidence\>\"", #& , BoxID -> "ResourceTag-Sample Data: Cancer Incidence-Input", AutoDelete->True]\), "Data"], {"PValue", "TestConclusion"}] // Column
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Gosia Konwerska, "Sample Data: Cancer Incidence" from the Wolfram Data Repository (2022)  

Data Resource History

  • Date Created:

Source Metadata

  • Citation: Coordinates of cases were provided by the Chorley and South Ribble Health Authority.

Publisher Information

  • Prepared for the Wolfram Data Repository By: Gosia Konwerska
    (Wolfram Research, Inc.)
  • Publisher of Record: Gosia Konwerska