Wolfram Data Repository

Immediate Computable Access to Curated Contributed Data

Cell Ontology Network

Network of ontology for cell types

The Cell ontology network shows the ontology for cell types. A directed edge from the term A to the term B means that A is a B. The name of a term is given by the annotation "TermName".

(1926 vertices, 2544 edges)

Examples

Basic Examples

Retrieve the graph:

In[1]:=
ResourceData["Cell Ontology Network"]
Out[1]=

Summary properties:

In[2]:=
ResourceData["Cell Ontology Network", All]["Summary"]
Out[2]=

Basic Applications

Show communities in the cell ontology network:

In[3]:=
g = ResourceData["Cell Ontology Network"];
In[4]:=
communities = FindGraphCommunities[g];
In[5]:=
HighlightGraph[g, communities]
Out[5]=

Find the term names of a community:

In[6]:=
AnnotationValue[{g, #}, "TermName"] & /@ Last[communities]
Out[6]=

Wolfram Research, "Cell Ontology Network" from the Wolfram Data Repository (2019)  

Data Resource History

  • Date Created:

Source Metadata

  • Citation: The Open Biological and Biomedical Ontologies, "http://www.obofoundry.org/"

Data Downloads

Publisher Information

  • Prepared for the Wolfram Data Repository By: Wolfram
  • Publisher of Record: Wolfram Research