Wolfram Research

Cell Ontology Network

Network of ontology for cell types

The Cell ontology network shows the ontology for cell types. A directed edge from the term A to the term B means that A is a B. The name of a term is given by the annotation "TermName".

Examples

Basic Examples

Retrieve the graph:

In[1]:=
ResourceData["Cell Ontology Network"]
Out[1]=

Summary properties:

In[2]:=
ResourceData["Cell Ontology Network", All]["Summary"]
Out[2]=

Basic Applications

Show communities in the cell ontology network:

In[3]:=
g = ResourceData["Cell Ontology Network"];
In[4]:=
communities = FindGraphCommunities[g];
In[5]:=
HighlightGraph[g, communities]
Out[5]=

Find the term names of a community:

In[6]:=
AnnotationValue[{g, #}, "TermName"] & /@ Last[communities]
Out[6]=

Wolfram Research, "Cell Ontology Network" from the Wolfram Data Repository (2019) 

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