Wolfram Research

Sample Data: Sea Anemones

Source Notebook

Locations of sea anemones (marine predatory animals, often quite colourful ), annotated with diameter marks

Details

Locations of sea anemones (marine predatory animals, often quite colourful ) in the observation region Rectangle[{0., 0.}, {280., 180.}], annotated with diameter marks.

Examples

Basic Examples (2) 

Retrieve the data:

In[1]:=
ResourceData[\!\(\*
TagBox["\"\<Sample Data: Sea Anemones\>\"",
#& ,
BoxID -> "ResourceTag-Sample Data: Sea Anemones-Input",
AutoDelete->True]\), "Data"]
Out[1]=

Summary of the spatial point data:

In[2]:=
ResourceData[\!\(\*
TagBox["\"\<Sample Data: Sea Anemones\>\"",
#& ,
BoxID -> "ResourceTag-Sample Data: Sea Anemones-Input",
AutoDelete->True]\), "Data"]["Summary"]
Out[2]=

Visualizations (3) 

Plot the spatial point data:

In[3]:=
ListPlot[ResourceData[\!\(\*
TagBox["\"\<Sample Data: Sea Anemones\>\"",
#& ,
BoxID -> "ResourceTag-Sample Data: Sea Anemones-Input",
AutoDelete->True]\), "Data"]]
Out[3]=

Visualize the points with annotations:

In[4]:=
PointValuePlot[ResourceData[\!\(\*
TagBox["\"\<Sample Data: Sea Anemones\>\"",
#& ,
BoxID -> "ResourceTag-Sample Data: Sea Anemones-Input",
AutoDelete->True]\), "Data"], {1 -> "Size"}]
Out[4]=

Visualize the smooth point density:

In[5]:=
density = SmoothPointDensity[ResourceData[\!\(\*
TagBox["\"\<Sample Data: Sea Anemones\>\"",
#& ,
BoxID -> "ResourceTag-Sample Data: Sea Anemones-Input",
AutoDelete->True]\), "Data"]]
Out[5]=
In[6]:=
Show[ContourPlot[density[{x, y}], {x, y} \[Element] ResourceData[\!\(\*
TagBox["\"\<Sample Data: Sea Anemones\>\"",
#& ,
BoxID -> "ResourceTag-Sample Data: Sea Anemones-Input",
AutoDelete->True]\), "ObservationRegion"], ColorFunction -> "Rainbow"], ListPlot[ResourceData[\!\(\*
TagBox["\"\<Sample Data: Sea Anemones\>\"",
#& ,
BoxID -> "ResourceTag-Sample Data: Sea Anemones-Input",
AutoDelete->True]\), "Data"], PlotStyle -> Black]]
Out[6]=

Analysis (4) 

Compute probability of finding a point within given radius of an existing point - NearestNeighborG is the CDF of the nearest neighbor distribution:

In[7]:=
nnG = NearestNeighborG[ResourceData[\!\(\*
TagBox["\"\<Sample Data: Sea Anemones\>\"",
#& ,
BoxID -> "ResourceTag-Sample Data: Sea Anemones-Input",
AutoDelete->True]\), "Data"]]
Out[7]=
In[8]:=
maxR = nnG["MaxRadius"]
Out[8]=
In[9]:=
DiscretePlot[nnG[r], {r, maxR/100, maxR, maxR/100}, AxesLabel -> {"radius", "probability"}]
Out[9]=

Mean distance between a typical point and its nearest neighbor (for positive support distribution can be approximated via a Riemann sum of 1-CDF):

In[10]:=
step = maxR/100;
partition = Table[{k, k + step}, {k, 0, maxR, step}];
values = nnG[Mean /@ partition];
In[11]:=
Total[(1 - values)*step]
Out[11]=

Test for complete spacial randomness:

In[12]:=
SpatialRandomnessTest[ResourceData[\!\(\*
TagBox["\"\<Sample Data: Sea Anemones\>\"",
#& ,
BoxID -> "ResourceTag-Sample Data: Sea Anemones-Input",
AutoDelete->True]\), "Data"], {"PValue", "TestConclusion"}]
Out[12]=

Fit a Poisson point process to data:

In[13]:=
EstimatedPointProcess[ResourceData[\!\(\*
TagBox["\"\<Sample Data: Sea Anemones\>\"",
#& ,
BoxID -> "ResourceTag-Sample Data: Sea Anemones-Input",
AutoDelete->True]\), "Data"], PoissonPointProcess[\[Mu], 2]]
Out[13]=

Gosia Konwerska, "Sample Data: Sea Anemones" from the Wolfram Data Repository (2021) 

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